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BMCBI
2011
12 years 10 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
PVLDB
2011
12 years 9 months ago
CoHadoop: Flexible Data Placement and Its Exploitation in Hadoop
Hadoop has become an attractive platform for large-scale data analytics. In this paper, we identify a major performance bottleneck of Hadoop: its lack of ability to colocate relat...
Mohamed Y. Eltabakh, Yuanyuan Tian, Fatma Özc...
GIS
2004
ACM
14 years 7 months ago
A serverless 3D world
Online multi-participant virtual-world systems have attracted significant interest from the Internet community but are hindered by their inability to efficiently support interacti...
Egemen Tanin, Aaron Harwood, Hanan Samet, Sarana N...
BMCBI
2008
146views more  BMCBI 2008»
13 years 6 months ago
EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries
Background: Several biological techniques result in the acquisition of functional sets of cDNAs that must be sequenced and analyzed. The emergence of redundant databases such as U...
Robin P. Smith, William J. Buchser, Marcus B. Lemm...
BMCBI
2008
129views more  BMCBI 2008»
13 years 6 months ago
EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management
Background: Microarray experimentation requires the application of complex analysis methods as well as the use of non-trivial computer technologies to manage the resultant large d...
Geraint Barton, J. C. Abbott, Norie Chiba, D. W. H...