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» Retrieval of 3D protein structures
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RECOMB
2009
Springer
16 years 2 months ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
BIOCOMP
2008
15 years 2 months ago
Inverse protein folding in 3D hexagonal prism lattice under HP model
Alireza Hadj Khodabakhshi, Ján Manuch, Aras...
BMCBI
2004
208views more  BMCBI 2004»
15 years 1 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
WABI
2009
Springer
130views Bioinformatics» more  WABI 2009»
15 years 8 months ago
Linear-Time Protein 3-D Structure Searching with Insertions and Deletions
It becomes more and more important to search for similar structures from molecular 3-D structure databases in the structural biology of the post genomic era. Two molecules are said...
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
APBC
2004
126views Bioinformatics» more  APBC 2004»
15 years 2 months ago
Informative 3D Visualization of Multiple Protein Structures
With the continued growth of three dimensional structural information databases comes a corresponding increase in interest in this data for the study of new sequences and an ever-...
Paulo Lai, Warren Kaplan, W. Bret Church, Raymond ...