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» Retrieval of 3D protein structures
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BMCBI
2008
146views more  BMCBI 2008»
15 years 1 months ago
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...
Jean-François Taly, Antoine Marin, Jean-Fra...
BICOB
2010
Springer
15 years 6 months ago
Folding-aware and Structure-conscious 3D Substructures in Folding Data: Identification and Applications
Molecular dynamics simulations have been employed by biologists to study the protein folding problem. Such simulations have resulted in a large number of protein folding trajector...
Hui Yang, Saurabh Gupte, Runtang Wang, Rahul Parte
3DPVT
2004
IEEE
15 years 5 months ago
Local Approximate 3D Matching of Proteins in Viral Cryo-EM Density Maps
Experimental structure analysis of biological molecules (e.g, proteins) or macromolecular complexes (e.g, viruses) can be used to generate three-dimensional density maps of these e...
Stefan Burkhardt, Kimmo Fredriksson, Tuomas Ojamie...
ISBI
2002
IEEE
16 years 2 months ago
Automated determination of protein subcellular locations from 3D fluorescence microscope images
Knowing the subcellular location of a protein is critical to a full understanding of its function, and automated, objective methods for assigning locations are needed as part of t...
Meel Velliste, Robert F. Murphy
BIOCOMP
2006
15 years 2 months ago
Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure
Most proteins function only when folded into a particular 3D configuration. Recently, a class of proteins has been discovered that do not fold into any particular configuration; t...
Mary Qu Yang, Jack Y. Yang