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CASCON
1996
134views Education» more  CASCON 1996»
15 years 5 months ago
Paradigm shift in software re-engineering: an experience report
Software re-engineering is one of the solutions advocated for the problems that are encountered during maintenance. The three major phases of a re-engineering process are (i) reve...
Kasilingam Periyasamy, C. Mathew
141
Voted
BMCBI
2007
154views more  BMCBI 2007»
15 years 3 months ago
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
Background: Identifying syntenic regions, i.e., blocks of genes or other markers with evolutionary conserved order, and quantifying evolutionary relatedness between genomes in ter...
Amit U. Sinha, Jaroslaw Meller
146
Voted
BMCBI
2008
123views more  BMCBI 2008»
15 years 3 months ago
Statistical methodology for the analysis of dye-switch microarray experiments
Background: In individually dye-balanced microarray designs, each biological sample is hybridized on two different slides, once with Cy3 and once with Cy5. While this strategy ens...
Tristan Mary-Huard, Julie Aubert, Nadera Mansouri-...
139
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BMCBI
2006
86views more  BMCBI 2006»
15 years 3 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
147
Voted
JSYML
2007
100views more  JSYML 2007»
15 years 3 months ago
Combinatorial principles weaker than Ramsey's Theorem for pairs
We investigate the complexity of various combinatorial theorems about linear and partial orders, from the points of view of computability theory and reverse mathematics. We focus ...
Denis R. Hirschfeldt, Richard A. Shore