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» Revisiting the Sequence Constraint
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CONSTRAINTS
2008
95views more  CONSTRAINTS 2008»
15 years 1 months ago
Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination
Aligning DNA and protein sequences is a core technique in molecular biology. Often, it is desirable to include partial prior knowledge and conditions in an alignment. Going beyond...
Sebastian Will, Anke Busch, Rolf Backofen
107
Voted
SAC
2006
ACM
15 years 7 months ago
Looking for monotonicity properties of a similarity constraint on sequences
Constraint-based mining techniques on sequence databases have been studied extensively the last few years and efficient algorithms enable to compute complete collections of patte...
Ieva Mitasiunaite, Jean-François Boulicaut
KDID
2003
93views Database» more  KDID 2003»
15 years 3 months ago
A Framework for Frequent Sequence Mining under Generalized Regular Expression Constraints
This paper provides a framework for the extraction of frequent sequences satisfying a given regular expression (RE) constraint. We take advantage of the information contained in th...
Hunor Albert-Lorincz, Jean-François Boulica...
BMCBI
2007
114views more  BMCBI 2007»
15 years 1 months ago
False occurrences of functional motifs in protein sequences highlight evolutionary constraints
Background: False occurrences of functional motifs in protein sequences can be considered as random events due solely to the sequence composition of a proteome. Here we use a nume...
Allegra Via, Pier Federico Gherardini, Enrico Ferr...
116
Voted
SDM
2009
SIAM
111views Data Mining» more  SDM 2009»
15 years 11 months ago
A New Constraint for Mining Sets in Sequences.
Discovering interesting patterns in event sequences is a popular task in the field of data mining. Most existing methods try to do this based on some measure of cohesion to deter...
Bart Goethals, Boris Cule, Céline Robardet