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» Rounding of Sequences and Matrices, with Applications
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BMCBI
2008
112views more  BMCBI 2008»
13 years 6 months ago
GlycomeDB - integration of open-access carbohydrate structure databases
Background: Although carbohydrates are the third major class of biological macromolecules, after proteins and DNA, there is neither a comprehensive database for carbohydrate struc...
René Ranzinger, Stephan Herget, Thomas Wett...
CONSTRAINTS
2011
12 years 10 months ago
CP and IP approaches to cancer radiotherapy delivery optimization
Abstract. We consider the problem of decomposing an integer matrix into a positively weighted sum of binary matrices that have the consecutive-ones property. This problem is well-k...
Davaatseren Baatar, Natashia Boland, Sebastian Bra...
BMCBI
2008
244views more  BMCBI 2008»
13 years 6 months ago
RNAalifold: improved consensus structure prediction for RNA alignments
Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...
BMCBI
2008
110views more  BMCBI 2008»
13 years 6 months ago
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated da
Background: We have previously described an approach to predicting the substrate specificity of serine-threonine protein kinases. The method, named Predikin, identifies key conser...
Neil F. W. Saunders, Ross I. Brinkworth, Thomas Hu...
BMCBI
2007
124views more  BMCBI 2007»
13 years 6 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...