58 search results - page 1 / 12 » RuleMonkey: software for stochastic simulation of rule-based... |
112
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BMCBI
2010
15 years 27 days ago
2010
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
118
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TCSB
2010
14 years 11 months ago
2010
Transcriptional attenuation at E.coli’s tryptophan operon is a prime example of RNA-mediated gene regulation. In this paper, we present a discrete stochastic model for this pheno...
132
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LICS
2010
IEEE
14 years 11 months ago
2010
IEEE
ing the differential semantics of rule-based models: exact and automated model reduction (Invited Lecture) Vincent Danos∗§, J´erˆome Feret†, Walter Fontana‡, Russell Harme...
93
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SIMULATION
2010
14 years 7 months ago
2010
160
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BMCBI
2004
15 years 19 days ago
2004
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...