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» Run-Time Methods for Parallelizing Partially Parallel Loops
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BMCBI
2010
109views more  BMCBI 2010»
15 years 4 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos
SIMPRA
2011
14 years 11 months ago
A real-time multigrid finite hexahedra method for elasticity simulation using CUDA
In this paper we present a GPU-based multigrid approach for simulating elastic deformable objects in real time. Our method is based on a finite element discretization of the defo...
Christian Dick, Joachim Georgii, Rüdiger West...
ICDM
2008
IEEE
117views Data Mining» more  ICDM 2008»
15 years 11 months ago
Improving Collaborative Filtering Recommendations Using External Data
This paper describes an approach for incorporating externally specified aggregate ratings information into certain types of collaborative filtering (CF) methods. For a statistic...
Akhmed Umyarov, Alexander Tuzhilin
HPCC
2005
Springer
15 years 10 months ago
Efficient SIMD Numerical Interpolation
This paper reports the results of SIMD implementation of a number of interpolation algorithms on common personal computers. These methods fit a curve on some given input points for...
Hossein Ahmadi, Maryam Moslemi Naeini, Hamid Sarba...
IPPS
2003
IEEE
15 years 9 months ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002