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BMCBI
2007
202views more  BMCBI 2007»
14 years 11 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
CEC
2009
IEEE
15 years 6 months ago
Evolutionary design of the energy function for protein structure prediction
— Automatic protein structure predictors use the notion of energy to guide the search towards good candidate structures. The energy functions used by the state-of-the-art predict...
Pawel Widera, Jonathan M. Garibaldi, Natalio Krasn...
CCE
2011
14 years 6 months ago
Computational energy-based redesign of robust proteins
The robustness of a system is a property that pervades all aspects of Nature. The ability of a system to adapt itself to perturbations due to internal and external agents, to agin...
Giovanni Stracquadanio, Giuseppe Nicosia
BMCBI
2010
92views more  BMCBI 2010»
14 years 12 months ago
HORI: a web server to compute Higher Order Residue Interactions in protein structures
Background: Folding of a protein into its three dimensional structure is influenced by both local and global interactions within a protein. Higher order residue interactions, like...
Pandurangan Sundaramurthy, Khader Shameer, Raashi ...
ICES
2003
Springer
114views Hardware» more  ICES 2003»
15 years 5 months ago
Evolving Fractal Proteins
The fractal protein is a new concept for improving evolvability, scalability, exploitability and providing a rich medium for evolution. Here the idea of fractal proteins is introdu...
Peter J. Bentley