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» SAT-based protein design
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RECOMB
2008
Springer
16 years 4 days ago
Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information
High-accuracy protein structure modeling demands accurate and very fast side chain prediction since such a procedure must be repeatedly called at each step of structure refinement....
Jing Zhang, Xin Gao, Jinbo Xu, Ming Li
IV
2006
IEEE
125views Visualization» more  IV 2006»
15 years 5 months ago
Visualization of Lattice-Based Protein Folding Simulations
Analysis of the spacial structure of proteins including folding processes is a challenge for modern bioinformatics. Due to limited experimental access to folding processes, comput...
Sebastian Potzsch, Gerik Scheuermann, Peter F. Sta...
CORR
2002
Springer
110views Education» more  CORR 2002»
14 years 11 months ago
Long Proteins with Unique Optimal Foldings in the H-P Model
It is widely accepted that (1) the natural or folded state of proteins is a global energy minimum, and (2) in most cases proteins fold to a unique state determined by their amino ...
Oswin Aichholzer, David Bremner, Erik D. Demaine, ...
GCB
2010
Springer
122views Biometrics» more  GCB 2010»
14 years 9 months ago
Quantitative Comparison of Genomic-Wide Protein Domain Distributions
Abstract: Investigations into the origins and evolution of regulatory mechanisms require quantitative estimates of the abundance and co-occurrence of functional protein domains amo...
Arli A. Parikesit, Peter F. Stadler, Sonja J. Proh...
CORR
2009
Springer
106views Education» more  CORR 2009»
14 years 9 months ago
A framework for protein and membrane interactions
dels at different abstraction levels; in particular, higher-level (e.g. membrane) activities can be given a formal biological justification in terms of low-level (i.e., protein) in...
Giorgio Bacci, Davide Grohmann, Marino Miculan