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» SGN Sim, a Stochastic Genetic Networks Simulator
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JCB
2006
114views more  JCB 2006»
13 years 6 months ago
A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes is built using the Gillespie algorithm with time delays as an example of a simpl...
Andre Ribeiro, Rui Zhu, Stuart A. Kauffman
DAC
2008
ACM
14 years 7 months ago
Automatic package and board decoupling capacitor placement using genetic algorithms and M-FDM
In the design of complex power distribution networks (PDN) with multiple power islands, it is required that the PDN represents a low impedance as seen by the digital modules. This...
Krishna Bharath, Ege Engin, Madhavan Swaminathan
CMG
2003
13 years 7 months ago
{Performance Modeling and Evaluation of Large-Scale J2EE Applications
The queueing Petri net (QPN) paradigm provides a number of benefits over conventional modeling paradigms such as queueing networks and generalized stochastic Petri nets. Using qu...
Samuel Kounev, Alejandro P. Buchmann
AAAI
2010
13 years 7 months ago
The Genetic Algorithm as a General Diffusion Model for Social Networks
Diffusion processes taking place in social networks are used to model a number of phenomena, such as the spread of human or computer viruses, and the adoption of products in `vira...
Mayank Lahiri, Manuel Cebrián
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
13 years 11 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling