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» SGN Sim, a Stochastic Genetic Networks Simulator
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JCB
2006
114views more  JCB 2006»
14 years 9 months ago
A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes is built using the Gillespie algorithm with time delays as an example of a simpl...
Andre Ribeiro, Rui Zhu, Stuart A. Kauffman
84
Voted
DAC
2008
ACM
15 years 10 months ago
Automatic package and board decoupling capacitor placement using genetic algorithms and M-FDM
In the design of complex power distribution networks (PDN) with multiple power islands, it is required that the PDN represents a low impedance as seen by the digital modules. This...
Krishna Bharath, Ege Engin, Madhavan Swaminathan
CMG
2003
14 years 11 months ago
{Performance Modeling and Evaluation of Large-Scale J2EE Applications
The queueing Petri net (QPN) paradigm provides a number of benefits over conventional modeling paradigms such as queueing networks and generalized stochastic Petri nets. Using qu...
Samuel Kounev, Alejandro P. Buchmann
AAAI
2010
14 years 10 months ago
The Genetic Algorithm as a General Diffusion Model for Social Networks
Diffusion processes taking place in social networks are used to model a number of phenomena, such as the spread of human or computer viruses, and the adoption of products in `vira...
Mayank Lahiri, Manuel Cebrián
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
15 years 2 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling