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» Scalable, updatable predictive models for sequence data
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NAR
2008
159views more  NAR 2008»
15 years 9 days ago
The UCSC Genome Browser Database: 2008 update
The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism ge...
Donna Karolchik, Robert M. Kuhn, Robert Baertsch, ...
BIBM
2008
IEEE
142views Bioinformatics» more  BIBM 2008»
15 years 6 months ago
Using Global Sequence Similarity to Enhance Biological Sequence Labeling
Identifying functionally important sites from biological sequences, formulated as a biological sequence labeling problem, has broad applications ranging from rational drug design ...
Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasa...
BMCBI
2008
112views more  BMCBI 2008»
15 years 14 days ago
A simplified approach to disulfide connectivity prediction from protein sequences
Background: Prediction of disulfide bridges from protein sequences is useful for characterizing structural and functional properties of proteins. Several methods based on differen...
Marc Vincent, Andrea Passerini, Matthieu Labb&eacu...
ICDM
2007
IEEE
131views Data Mining» more  ICDM 2007»
15 years 6 months ago
Characterizing RNA Secondary-Structure Features and Their Effects on Splice-Site Prediction
— RNA molecules are distinguished by their sequence composition and by their three-dimensional shape, called the secondary structure. The secondary structure of a pre-mRNA sequen...
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur
IROS
2007
IEEE
94views Robotics» more  IROS 2007»
15 years 6 months ago
Two-way translation of compound sentences and arm motions by recurrent neural networks
- We present a connectionist model that combines motions and language based on the behavioral experiences of a real robot. Two models of recurrent neural network with parametric bi...
Tetsuya Ogata, Masamitsu Murase, Jun Tani, Kazunor...