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» Scalable, updatable predictive models for sequence data
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110
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BMCBI
2010
127views more  BMCBI 2010»
15 years 22 days ago
PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactom
Background: Signal transduction events often involve transient, yet specific, interactions between structurally conserved protein domains and polypeptide sequences in target prote...
Khader Shameer, Lalima L. Madan, Shivamurthy Veera...
93
Voted
NIPS
2007
15 years 2 months ago
Robust Regression with Twinned Gaussian Processes
We propose a Gaussian process (GP) framework for robust inference in which a GP prior on the mixing weights of a two-component noise model augments the standard process over laten...
Andrew Naish-Guzman, Sean B. Holden
132
Voted
BMCBI
2010
160views more  BMCBI 2010»
14 years 7 months ago
eHive: An Artificial Intelligence workflow system for genomic analysis
Background: The Ensembl project produces updates to its comparative genomics resources with each of its several releases per year. During each release cycle approximately two week...
Jessica Severin, Kathryn Beal, Albert J. Vilella, ...
121
Voted
SDM
2003
SIAM
123views Data Mining» more  SDM 2003»
15 years 2 months ago
Fast Online SVD Revisions for Lightweight Recommender Systems
The singular value decomposition (SVD) is fundamental to many data modeling/mining algorithms, but SVD algorithms typically have quadratic complexity and require random access to ...
Matthew Brand
AAECC
2007
Springer
111views Algorithms» more  AAECC 2007»
15 years 22 days ago
When cache blocking of sparse matrix vector multiply works and why
Abstract. We present new performance models and a new, more compact data structure for cache blocking when applied to the sparse matrixvector multiply (SpM×V) operation, y ← y +...
Rajesh Nishtala, Richard W. Vuduc, James Demmel, K...