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IPPS
2006
IEEE
15 years 10 months ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
ICPP
2003
IEEE
15 years 9 months ago
A Recovery Algorithm for Reliable Multicasting in Reliable Networks
Any reliable multicast protocol requires some recovery mechanism. A generic description of a recovery mechanism consists of a prioritized list of recovery servers/receivers (clien...
Danyang Zhang, Sibabrata Ray, Rajgopal Kannan, S. ...
IPPS
2010
IEEE
15 years 2 months ago
Overlapping computation and communication: Barrier algorithms and ConnectX-2 CORE-Direct capabilities
Abstract--This paper explores the computation and communication overlap capabilities enabled by the new CORE-Direct hardware capabilities introduced in the InfiniBand (IB) Host Cha...
Richard L. Graham, Stephen W. Poole, Pavel Shamis,...
COLCOM
2008
IEEE
15 years 10 months ago
Replication in Overlay Networks: A Multi-objective Optimization Approach
Recently, overlay network-based collaborative applications such as instant messaging, content sharing, and Internet telephony are becoming increasingly popular. Many of these appli...
Osama Al-Haj Hassan, Lakshmish Ramaswamy, John A. ...
IPPS
2009
IEEE
15 years 11 months ago
Designing multi-leader-based Allgather algorithms for multi-core clusters
The increasing demand for computational cycles is being met by the use of multi-core processors. Having large number of cores per node necessitates multi-core aware designs to ext...
Krishna Chaitanya Kandalla, Hari Subramoni, Gopala...