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ICPP
2006
IEEE
15 years 10 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
IPPS
2006
IEEE
15 years 10 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
KDD
2009
ACM
228views Data Mining» more  KDD 2009»
16 years 5 months ago
A generalized Co-HITS algorithm and its application to bipartite graphs
Recently many data types arising from data mining and Web search applications can be modeled as bipartite graphs. Examples include queries and URLs in query logs, and authors and ...
Hongbo Deng, Michael R. Lyu, Irwin King
PPSN
2004
Springer
15 years 9 months ago
SPEA2+: Improving the Performance of the Strength Pareto Evolutionary Algorithm 2
Multi-objective optimization methods are essential to resolve real-world problems as most involve several types of objects. Several multi-objective genetic algorithms have been pro...
Mifa Kim, Tomoyuki Hiroyasu, Mitsunori Miki, Shiny...
IPPS
2003
IEEE
15 years 9 months ago
Design and Evaluation of a Parallel HOP Clustering Algorithm for Cosmological Simulation
Clustering, or unsupervised classification, has many uses in fields that depend on grouping results from large amount of data, an example being the N-body cosmological simulation ...
Ying Liu, Wei-keng Liao, Alok N. Choudhary