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IPPS
2009
IEEE
15 years 11 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
EUROPAR
2008
Springer
15 years 6 months ago
Empirical Analysis of a Large-Scale Hierarchical Storage System
To prepare for future peta- or exa-scale computing, it is important to gain a good understanding on what impacts a hierarchical storage system would have on the performance of data...
Weikuan Yu, Sarp Oral, Shane Canon, Jeffrey S. Vet...
FGCS
2008
140views more  FGCS 2008»
15 years 4 months ago
Blocking vs. non-blocking coordinated checkpointing for large-scale fault tolerant MPI Protocols
A long-term trend in high-performance computing is the increasing number of nodes in parallel computing platforms, which entails a higher failure probability. Fault tolerant progr...
Darius Buntinas, Camille Coti, Thomas Hérau...
IPPS
2009
IEEE
15 years 11 months ago
Ibis: Real-world problem solving using real-world grids
Ibis is an open source software framework that drastically simplifies the process of programming and deploying large-scale parallel and distributed grid applications. Ibis suppor...
Henri E. Bal, Niels Drost, Roelof Kemp, Jason Maas...
PPOPP
2011
ACM
14 years 7 months ago
ScalaExtrap: trace-based communication extrapolation for spmd programs
Performance modeling for scientific applications is important for assessing potential application performance and systems procurement in high-performance computing (HPC). Recent ...
Xing Wu, Frank Mueller