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» Scaling Science Applications on Blue Gene
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PPL
2011
14 years 12 days ago
Mpi on millions of Cores
Petascale parallel computers with more than a million processing cores are expected to be available in a couple of years. Although MPI is the dominant programming interface today ...
Pavan Balaji, Darius Buntinas, David Goodell, Will...
ESCIENCE
2007
IEEE
15 years 3 months ago
Distributed and Generic Maximum Likelihood Evaluation
This paper presents GMLE 1 , a generic and distributed framework for maximum likelihood evaluation. GMLE is currently being applied to astroinformatics for determining the shape o...
Travis J. Desell, Nathan Cole, Malik Magdon-Ismail...
IPPS
2006
IEEE
15 years 3 months ago
Conjugate gradient sparse solvers: performance-power characteristics
We characterize the performance and power attributes of the conjugate gradient (CG) sparse solver which is widely used in scientific applications. We use cycle-accurate simulatio...
Konrad Malkowski, Ingyu Lee, Padma Raghavan, Mary ...
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
15 years 10 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...
BICOB
2009
Springer
15 years 4 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...