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» Scheduling dynamic parallelism on accelerators
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IPPS
2005
IEEE
14 years 7 hour ago
Fault-Tolerant Parallel Applications with Dynamic Parallel Schedules
Commodity computer clusters are often composed of hundreds of computing nodes. These generally off-the-shelf systems are not designed for high reliability. Node failures therefore...
Sebastian Gerlach, Roger D. Hersch
VLSISP
2010
119views more  VLSISP 2010»
13 years 1 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton
ICCAD
2009
IEEE
179views Hardware» more  ICCAD 2009»
13 years 4 months ago
Automatic memory partitioning and scheduling for throughput and power optimization
Hardware acceleration is crucial in modern embedded system design to meet the explosive demands on performance and cost. Selected computation kernels for acceleration are usually ...
Jason Cong, Wei Jiang, Bin Liu, Yi Zou
ASPDAC
1998
ACM
86views Hardware» more  ASPDAC 1998»
13 years 10 months ago
Parallelization in Co-Compilation for Configurable Accelerators
— The paper introduces a novel co-compiler and its “vertical” parallelization method, including a general model for co-operating host/accelerator platforms and a new parallel...
Jürgen Becker, Reiner W. Hartenstein, Michael...
BCB
2010
156views Bioinformatics» more  BCB 2010»
13 years 1 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...