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RECOMB
2007
Springer
16 years 3 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
RECOMB
2006
Springer
16 years 3 months ago
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
RECOMB
2005
Springer
16 years 3 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
132
Voted
STOC
2006
ACM
149views Algorithms» more  STOC 2006»
16 years 3 months ago
Bounded-error quantum state identification and exponential separations in communication complexity
We consider the problem of bounded-error quantum state identification: given either state 0 or state 1, we are required to output `0', `1' or `?' ("don't ...
Dmitry Gavinsky, Julia Kempe, Oded Regev, Ronald d...
SIGMOD
2007
ACM
124views Database» more  SIGMOD 2007»
16 years 3 months ago
Querying xml with update syntax
This paper investigates a class of transform queries proposed by XQuery Update [6]. A transform query is defined in terms of XML update syntax. When posed on an XML tree T, it ret...
Wenfei Fan, Gao Cong, Philip Bohannon
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