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BMCBI
2005
152views more  BMCBI 2005»
14 years 10 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
GECCO
2006
Springer
132views Optimization» more  GECCO 2006»
15 years 1 months ago
The role of diverse populations in phylogenetic analysis
The most popular approaches for reconstructing phylogenetic trees attempt to solve NP-hard optimization criteria such as maximum parsimony (MP). Currently, the bestperforming heur...
Tiffani L. Williams, Marc L. Smith
PVLDB
2008
98views more  PVLDB 2008»
14 years 9 months ago
Performance profiling with EndoScope, an acquisitional software monitoring framework
We propose EndoScope, a software monitoring framework that allows users to pose declarative queries that monitor the state and performance of running programs. Unlike most existin...
Alvin Cheung, Samuel Madden
AAAI
2010
14 years 11 months ago
Fast Algorithms for Top-k Approximate String Matching
Top-k approximate querying on string collections is an important data analysis tool for many applications, and it has been exhaustively studied. However, the scale of the problem ...
Zhenglu Yang, Jianjun Yu, Masaru Kitsuregawa
MCAM
2007
Springer
129views Multimedia» more  MCAM 2007»
15 years 4 months ago
Learning Concepts by Modeling Relationships
Supporting multimedia search has emerged as an important research topic. There are three paradigms on the research spectrum that ranges from the least automatic to the most automat...
Yong Rui, Guo-Jun Qi