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BMCBI
2007
124views more  BMCBI 2007»
14 years 9 months ago
BranchClust: a phylogenetic algorithm for selecting gene families
Background: Automated methods for assembling families of orthologous genes include those based on sequence similarity scores and those based on phylogenetic approaches. The first ...
Maria S. Poptsova, J. Peter Gogarten
CPAIOR
2010
Springer
15 years 1 months ago
An In-Out Approach to Disjunctive Optimization
Cutting plane methods are widely used for solving convex optimization problems and are of fundamental importance, e.g., to provide tight bounds for Mixed-Integer Programs (MIPs). T...
Matteo Fischetti, Domenico Salvagnin
BMCBI
2007
164views more  BMCBI 2007»
14 years 9 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
GECCO
2007
Springer
161views Optimization» more  GECCO 2007»
15 years 3 months ago
On solving hierarchical problems with top down control
We review recent work on the Hierarchical-If-And-Only-If problem and present a new hierarchical problem, HIFF-M that does not fit with previous explanations for evolutionary diffi...
Susan Khor
GECCO
2005
Springer
131views Optimization» more  GECCO 2005»
15 years 3 months ago
Multipopulation cooperative coevolutionary programming (MCCP) to enhance design innovation
This paper describes the development of an evolutionary algorithm called Multipopulation Cooperative Coevolutionary Programming (MCCP) that extends Genetic Programming (GP) to sea...
Emily M. Zechman, S. Ranji Ranjithan