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BMCBI
2011
14 years 1 months ago
RAG: An Update to the RNA-As-Graphs Resource
Background: In 2004, we presented a web resource for stimulating the search for novel RNAs, RNA-As-Graphs (RAG), which classified, catalogued, and predicted RNA secondary structur...
Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly, Tam...
99
Voted
BMCBI
2011
14 years 4 months ago
Simulated evolution applied to study the genetic code optimality using a model of codon reassignments
Background: As the canonical code is not universal, different theories about its origin and organization have appeared. The optimization or level of adaptation of the canonical ge...
Jose Santos, Ángel Monteagudo
93
Voted
SAC
2010
ACM
14 years 10 months ago
FANGS: high speed sequence mapping for next generation sequencers
Next Generation Sequencing machines are generating millions of short DNA sequences (reads) everyday. There is a need for efficient algorithms to map these sequences to the referen...
Sanchit Misra, Ramanathan Narayanan, Simon Lin, Al...
GECCO
2009
Springer
172views Optimization» more  GECCO 2009»
15 years 2 months ago
Comparison of similarity measures for the multi-objective vehicle routing problem with time windows
The Vehicle Routing Problem can be seen as a fusion of two well known combinatorial problems, the Travelling Salesman Problem and Bin Packing Problem. It has several variants, the...
Abel Garcia-Najera, John A. Bullinaria
GECCO
2009
Springer
191views Optimization» more  GECCO 2009»
15 years 4 months ago
Evolvable malware
The concept of artificial evolution has been applied to numerous real world applications in different domains. In this paper, we use this concept in the domain of virology to ev...
Sadia Noreen, Shafaq Murtaza, M. Zubair Shafiq, Mu...