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PSB
2003
14 years 11 months ago
MAP: Searching Large Genome Databases
A number of biological applications require comparison of large genome strings. Current techniques suffer from both disk I/O and computational cost because of extensive memory req...
Tamer Kahveci, Ambuj K. Singh
BIOCOMP
2007
14 years 11 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
Xuehui Li, Tamer Kahveci
DATESO
2007
104views Database» more  DATESO 2007»
14 years 11 months ago
Shape Extraction Framework for Similarity Search in Image Databases
The task of similarity search in image databases has been studied for decades, while there have been many feature extraction techniques proposed. Among the mass of low-level techni...
Jan Klima, Tomás Skopal
CSR
2006
Springer
15 years 1 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
ICSNW
2004
Springer
238views Database» more  ICSNW 2004»
15 years 3 months ago
Knowledge Sifter: Agent-Based Ontology-Driven Search over Heterogeneous Databases Using Semantic Web Services
Knowledge Sifter is a scaleable agent-based system that supports access to heterogeneous information sources such as the Web, open-source repositories, XML-databases and the emergi...
Larry Kerschberg, Mizan Chowdhury, Alberto Damiano...