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CORR
2010
Springer
127views Education» more  CORR 2010»
14 years 10 months ago
Profile Based Sub-Image Search in Image Databases
Sub-image search with high accuracy in natural images still remains a challenging problem. This paper proposes a new feature vector called profile for a keypoint in a bag of visual...
Vishwakarma Singh, Ambuj K. Singh
RECOMB
2005
Springer
15 years 10 months ago
A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search
An accurate scoring function for database search is crucial for peptide identification using tandem mass spectrometry. Although many mathematical models have been proposed to scor...
Yunhu Wan, Ting Chen
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
15 years 3 months ago
Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches
PSI-BLAST remains one of the popular tools for searching remote homologs in sequence databases. We recently demonstrated that hybrid alignment can function as the alignment core f...
Yuheng Li, Mario Lauria, Ralf Bundschuh
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 3 months ago
On Optimizing Distance-Based Similarity Search for Biological Databases
Similarity search leveraging distance-based index structures is increasingly being used for both multimedia and biological database applications. We consider distance-based indexi...
Rui Mao, Weijia Xu, Smriti R. Ramakrishnan, Glen N...
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
15 years 3 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu