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BMCBI
2008
142views more  BMCBI 2008»
14 years 12 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
ICDE
2008
IEEE
162views Database» more  ICDE 2008»
16 years 1 months ago
Adaptive Approximate Similarity Searching through Metric Social Networks
Exploiting the concepts of social networking represents a novel approach to the approximate similarity query processing. We present a metric social network where relations between...
Jan Sedmidubský, Pavel Zezula, Stanislav Ba...
CSB
2003
IEEE
116views Bioinformatics» more  CSB 2003»
15 years 5 months ago
Towards Index-based Similarity Search for Protein Structure Databases
We propose two methods for finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements) of prote...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
DEXAW
2006
IEEE
130views Database» more  DEXAW 2006»
15 years 5 months ago
Exploiting Geometrical Properties on Protein Similarity Search
This paper discusses about several combinations of protein similarity measurement-methods, with respect to normalization, spatial partitions, geometrical properties, and distance ...
Saiful Akbar, Josef Küng, Roland Wagner
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
15 years 5 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu