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IPPS
2010
IEEE
15 years 5 days ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
HPCA
2011
IEEE
14 years 6 months ago
Exploiting criticality to reduce bottlenecks in distributed uniprocessors
Composable multicore systems merge multiple independent cores for running sequential single-threaded workloads. The performance scalability of these systems, however, is limited d...
Behnam Robatmili, Madhu Saravana Sibi Govindan, Do...
PPOPP
2012
ACM
13 years 9 months ago
Massively parallel breadth first search using a tree-structured memory model
Analysis of massive graphs has emerged as an important area for massively parallel computation. In this paper, it is shown how the Fresh Breeze trees-of-chunks memory model may be...
Tom St. John, Jack B. Dennis, Guang R. Gao
HPCA
2008
IEEE
16 years 2 months ago
Thread-safe dynamic binary translation using transactional memory
Dynamic binary translation (DBT) is a runtime instrumentation technique commonly used to support profiling, optimization, secure execution, and bug detection tools for application...
JaeWoong Chung, Michael Dalton, Hari Kannan, Chris...
ICFP
2003
ACM
16 years 2 months ago
A static type system for JVM access control
This paper presents a static type system for JAVA Virtual Machine (JVM) code that enforces an access control mechanism similar to the one found, for example, in a JAVA implementat...
Tomoyuki Higuchi, Atsushi Ohori