Sciweavers

409 search results - page 11 / 82
» Segment-based multiple sequence alignment
Sort
View
CANDC
2005
ACM
14 years 9 months ago
MSAID: multiple sequence alignment based on a measure of information discrepancy
We propose an algorithm of global multiple sequence alignment that is based on a measure of what we call information discrepancy. The algorithm follows a progressive alignment ite...
Min Zhang, Weiwu Fang, Junhua Zhang, Zhongxian Chi
GECCO
2005
Springer
112views Optimization» more  GECCO 2005»
15 years 3 months ago
A multiple objective evolutionary algorithm for multiple sequence alignment
The problem of multiple sequence alignment is important for bioinformatics. This problem is widely studied and a popular tool to solve this problem is Clustal X. This work introdu...
Pasut Seeluangsawat, Prabhas Chongstitvatana
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
15 years 3 months ago
TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...
Aswath Manohar, Serafim Batzoglou
NAACL
2010
14 years 7 months ago
Prenominal Modifier Ordering via Multiple Sequence Alignment
Producing a fluent ordering for a set of prenominal modifiers in a noun phrase (NP) is a problematic task for natural language generation and machine translation systems. We prese...
Aaron Dunlop, Margaret Mitchell, Brian Roark
BMCBI
2005
125views more  BMCBI 2005»
14 years 9 months ago
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Mic...