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» Segment-based multiple sequence alignment
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CIKM
2009
Springer
15 years 11 months ago
Linear predictive coding representation of correlated mutation for protein sequence alignment
Background: Although both conservation and correlated mutation (CM) are important information reflecting the different sorts of context in multiple sequence alignment, most of ali...
Chan-seok Jeong, Dongsup Kim
PAMI
2002
85views more  PAMI 2002»
15 years 4 months ago
Spatio-Temporal Alignment of Sequences
This paper studies the problem of sequence-to-sequence alignment, namely, establishing correspondences in time and in space between two different video sequences of the same dynami...
Yaron Caspi, Michal Irani
BMEI
2008
IEEE
15 years 11 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
BMCBI
2007
126views more  BMCBI 2007»
15 years 4 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
JCB
2002
116views more  JCB 2002»
15 years 4 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye