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» Segment-based multiple sequence alignment
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NAR
2011
157views Computer Vision» more  NAR 2011»
14 years 15 days ago
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
We updated the plant transcription factor (TF) database to version 2.0 (PlantTFDB 2.0, http:// planttfdb.cbi.pku.edu.cn) which contains 53 319 putative TFs predicted from 49 speci...
He Zhang, Jinpu Jin, Liang Tang, Yi Zhao, Xiaochen...
RECOMB
2005
Springer
15 years 10 months ago
Recognition of Binding Patterns Common to a Set of Protein Structures
We present a novel computational method, MultiBind, for recognition of binding patterns common to a set of protein structures. It is the first method which performs a multiple alig...
Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussi...
BMCBI
2004
123views more  BMCBI 2004»
14 years 9 months ago
galaxieEST: addressing EST identity through automated phylogenetic analysis
Background: Research involving expressed sequence tags (ESTs) is intricately coupled to the existence of large, well-annotated sequence repositories. Comparatively complete and sa...
R. Henrik Nilsson, Balaji Rajashekar, Karl-Henrik ...
BMCBI
2008
145views more  BMCBI 2008»
14 years 9 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
BMCBI
2010
145views more  BMCBI 2010»
14 years 9 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...