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» Segment-based multiple sequence alignment
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2000
ACM
156views Algorithms» more  STOC 2000»
15 years 1 months ago
Near optimal multiple alignment within a band in polynomial time
Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
Ming Li, Bin Ma, Lusheng Wang
NAR
2006
129views more  NAR 2006»
14 years 9 months ago
AliWABA: alignment on the web through an A-Bruijn approach
Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
Neil C. Jones, Degui Zhi, Benjamin J. Raphael
57
Voted
BIOINFORMATICS
2000
110views more  BIOINFORMATICS 2000»
14 years 9 months ago
ProtEST: protein multiple sequence alignments from expressed sequence tags
James A. Cuff, Ewan Birney, Michele E. Clamp, Geof...
BMCBI
2004
156views more  BMCBI 2004»
14 years 9 months ago
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...
BMCBI
2010
147views more  BMCBI 2010»
14 years 9 months ago
Automatic detection of anchor points for multiple sequence alignment
Background: Determining beforehand specific positions to align (anchor points) has proved valuable for the accuracy of automated multiple sequence alignment (MSA) software. This f...
Florian Pitschi, Claudine Devauchelle, Eduardo Cor...