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» Selecting Genomes for Reconstruction of Ancestral Genomes
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WABI
2004
Springer
100views Bioinformatics» more  WABI 2004»
15 years 3 months ago
Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data
In the last few years, it has become routine to use gene-order data to reconstruct phylogenies, both in terms of edge distances (parsimonious sequences of operations that transform...
Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard...
49
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BIOINFORMATICS
2008
84views more  BIOINFORMATICS 2008»
14 years 10 months ago
Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony
Onur Sakarya, Kenneth S. Kosik, Todd H. Oakley
89
Voted
JCB
2008
81views more  JCB 2008»
14 years 10 months ago
Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns
Traditionally nonrecombinant genome, i.e., mtDNA or Y chromosome, has been used for phylogeography, notably for ease of analysis. The topology of the phylogeny structure in this c...
Laxmi Parida, Marta Melé, Francesc Calafell...
100
Voted
CSB
2003
IEEE
106views Bioinformatics» more  CSB 2003»
15 years 3 months ago
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss
As gene order evolves through a variety of chromosomal rearrangements, conserved segments provide important insight into evolutionary relationships and functional roles of genes. ...
Jun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision