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» Selecting Structural Patterns for Classification
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ISMB
2000
14 years 11 months ago
Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated
Determination of the functions of all expressed proteins represents one of the major upcoming challenges in computational molecular biology. Since subcellular location plays a cru...
Robert F. Murphy, Michael V. Boland, Meel Velliste
BMCBI
2010
122views more  BMCBI 2010»
14 years 10 months ago
An automated framework for understanding structural variations in the binding grooves of MHC class II molecules
Background: MHC/HLA class II molecules are important components of the immune system and play a critical role in processes such as phagocytosis. Understanding peptide recognition ...
Kalidas Yeturu, Tapani Utriainen, Graham J. L. Kem...
BMCBI
2006
202views more  BMCBI 2006»
14 years 10 months ago
Spectral embedding finds meaningful (relevant) structure in image and microarray data
Background: Accurate methods for extraction of meaningful patterns in high dimensional data have become increasingly important with the recent generation of data types containing ...
Brandon W. Higgs, Jennifer W. Weller, Jeffrey L. S...
BMCBI
2007
164views more  BMCBI 2007»
14 years 10 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
VLDB
2005
ACM
139views Database» more  VLDB 2005»
15 years 3 months ago
Tree-Pattern Queries on a Lightweight XML Processor
Popular XML languages, like XPath, use “treepattern” queries to select nodes based on their structural characteristics. While many processing methods have already been propose...
Mirella Moura Moro, Zografoula Vagena, Vassilis J....