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BMCBI
2011
14 years 4 months ago
AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm
Background: Cross-platform analysis of gene express data requires multiple, intricate processes at different layers with various platforms. However, existing tools handle only a s...
Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston ...
BMCBI
2010
132views more  BMCBI 2010»
14 years 9 months ago
Consistency, comprehensiveness, and compatibility of pathway databases
Background: It is necessary to analyze microarray experiments together with biological information to make better biological inferences. We investigate the adequacy of current bio...
Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
IJBRA
2007
89views more  IJBRA 2007»
14 years 9 months ago
Conservative adjustment of permutation p-values when the number of permutations is limited
The permutation procedure is widely used to assess the significance level (p-value) of a test statistic. This approach is asymptotically consistent. In genomics and proteomics st...
Yinglei Lai
ISMIS
2003
Springer
15 years 2 months ago
Evolutionary Computation for Optimal Ensemble Classifier in Lymphoma Cancer Classification
Owing to the development of DNA microarray technologies, it is possible to get thousands of expression levels of genes at once. If we make the effective classification system with ...
Chanho Park, Sung-Bae Cho
BMCBI
2008
110views more  BMCBI 2008»
14 years 9 months ago
Testing for treatment effects on gene ontology
In studies that use DNA arrays to assess changes in gene expression, it is preferable to measure the significance of treatment effects on a group of genes from a pathway or functi...
Taewon Lee, Varsha G. Desai, Cruz Velasco, Robert ...