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» Self-Explanatory Simulations: Scaling Up to Large Models
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MMAS
2011
Springer
14 years 4 months ago
Scalable Bayesian Reduced-Order Models for Simulating High-Dimensional Multiscale Dynamical Systems
While existing mathematical descriptions can accurately account for phenomena at microscopic scales (e.g. molecular dynamics), these are often high-dimensional, stochastic and thei...
Phaedon-Stelios Koutsourelakis, Elias Bilionis
WAN
1998
Springer
15 years 1 months ago
Performance Analysis of Wavefront Algorithms on Very-Large Scale Distributed Systems
We present a model for the parallel performance of algorithms that consist of concurrent, two-dimensional wavefronts implemented in a message passing environment. The model combine...
Adolfy Hoisie, Olaf M. Lubeck, Harvey J. Wasserman
EUROPAR
2009
Springer
15 years 4 months ago
PSINS: An Open Source Event Tracer and Execution Simulator for MPI Applications
The size of supercomputers in numbers of processors is growing exponentially. Today’s largest supercomputers have upwards of a hundred thousand processors and tomorrow’s may ha...
Mustafa M. Tikir, Michael Laurenzano, Laura Carrin...
BMCBI
2011
14 years 1 months ago
Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks v
Background: Constraint-based approaches facilitate the prediction of cellular metabolic capabilities, based, in turn on predictions of the repertoire of enzymes encoded in the gen...
Jacek Sroka, Lukasz Bieniasz-Krzywiec, Szymon Gwoz...
CNHPCA
2009
Springer
15 years 4 months ago
Benchmarking Parallel I/O Performance for a Large Scale Scientific Application on the TeraGrid
This paper is a report on experiences in benchmarking I/O performance on leading computational facilities on the NSF TeraGrid network with a large scale scientific application. In...
Frank Löffler, Jian Tao, Gabrielle Allen, Eri...