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» Self-Explanatory Simulations: Scaling Up to Large Models
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BMCBI
2008
158views more  BMCBI 2008»
14 years 10 months ago
LC-MSsim - a simulation software for liquid chromatography mass spectrometry data
Background: Mass Spectrometry coupled to Liquid Chromatography (LC-MS) is commonly used to analyze the protein content of biological samples in large scale studies. The data resul...
Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gr&oum...
ICML
2009
IEEE
15 years 10 months ago
Online dictionary learning for sparse coding
Sparse coding--that is, modelling data vectors as sparse linear combinations of basis elements--is widely used in machine learning, neuroscience, signal processing, and statistics...
Julien Mairal, Francis Bach, Jean Ponce, Guillermo...
BMCBI
2007
202views more  BMCBI 2007»
14 years 9 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
SIAMSC
2008
113views more  SIAMSC 2008»
14 years 9 months ago
An Efficient and Robust Method for Simulating Two-Phase Gel Dynamics
We develop a computational method for simulating models of gel dynamics where the gel is described by two phases, a networked polymer and a fluid solvent. The models consist of tra...
Grady B. Wright, Robert D. Guy, Aaron L. Fogelson
KAIS
2010
132views more  KAIS 2010»
14 years 8 months ago
Integrating multiple document features in language models for expert finding
We argue that expert finding is sensitive to multiple document features in an organizational intranet. These document features include multiple levels of associations between expe...
Jianhan Zhu, Xiangji Huang, Dawei Song, Stefan M. ...