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» Semantic Mining and Analysis of Gene Expression Data
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BIODATAMINING
2008
140views more  BIODATAMINING 2008»
14 years 10 months ago
Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics appr
Background: Comorbidity of Major Depressive Disorder (depression) and Alcohol Use Disorders (AUD) is well documented. Depression, AUD, and the comorbidity of depression with AUD s...
Richard C. McEachin, Benjamin J. Keller, Erika F. ...
BIOCOMP
2006
14 years 11 months ago
A Heuristic Approach to Scoring Gene Clustering Algorithms
In the past decades, many clustering algorithms have been proposed for the analysis of gene expression data, but little guidance is available to help choose among them. Given the ...
Longde Yin, Chun-Hsi Huang
BMCBI
2008
138views more  BMCBI 2008»
14 years 10 months ago
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
Background: The hierarchical clustering tree (HCT) with a dendrogram [1] and the singular value decomposition (SVD) with a dimension-reduced representative map [2] are popular met...
Yin-Jing Tien, Yun-Shien Lee, Han-Ming Wu, Chun-Ho...
BMCBI
2008
128views more  BMCBI 2008»
14 years 9 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
PKDD
2001
Springer
108views Data Mining» more  PKDD 2001»
15 years 2 months ago
Knowledge Discovery in Multi-label Phenotype Data
The biological sciences are undergoing an explosion in the amount of available data. New data analysis methods are needed to deal with the data. We present work using KDD to analys...
Amanda Clare, Ross D. King