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» Semi-supervised protein classification using cluster kernels
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ICML
2007
IEEE
16 years 17 days ago
Support cluster machine
For large-scale classification problems, the training samples can be clustered beforehand as a downsampling pre-process, and then only the obtained clusters are used for training....
Bin Li, Mingmin Chi, Jianping Fan, Xiangyang Xue
IJDMB
2008
128views more  IJDMB 2008»
14 years 11 months ago
Protein homology detection with biologically inspired features and interpretable statistical models
: Computational classification of proteins using methods such as string kernels and Fisher-SVM has demonstrated great success. However, the resulting models do not offer an immedia...
Pai-Hsi Huang, Vladimir Pavlovic
NIPS
2008
15 years 1 months ago
Scalable Algorithms for String Kernels with Inexact Matching
We present a new family of linear time algorithms based on sufficient statistics for string comparison with mismatches under the string kernels framework. Our algorithms improve t...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic
BMCBI
2007
227views more  BMCBI 2007»
14 years 12 months ago
Growing functional modules from a seed protein via integration of protein interaction and gene expression data
Background: Nowadays modern biology aims at unravelling the strands of complex biological structures such as the protein-protein interaction (PPI) networks. A key concept in the o...
Ioannis A. Maraziotis, Konstantina Dimitrakopoulou...
BMCBI
2006
118views more  BMCBI 2006»
14 years 11 months ago
A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images
Background: Knowledge of the subcellular location of a protein is critical to understanding how that protein works in a cell. This location is frequently determined by the interpr...
Shann-Ching Chen, Robert F. Murphy