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» Semi-supervised protein classification using cluster kernels
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ICML
2007
IEEE
16 years 2 months ago
Support cluster machine
For large-scale classification problems, the training samples can be clustered beforehand as a downsampling pre-process, and then only the obtained clusters are used for training....
Bin Li, Mingmin Chi, Jianping Fan, Xiangyang Xue
IJDMB
2008
128views more  IJDMB 2008»
15 years 1 months ago
Protein homology detection with biologically inspired features and interpretable statistical models
: Computational classification of proteins using methods such as string kernels and Fisher-SVM has demonstrated great success. However, the resulting models do not offer an immedia...
Pai-Hsi Huang, Vladimir Pavlovic
NIPS
2008
15 years 2 months ago
Scalable Algorithms for String Kernels with Inexact Matching
We present a new family of linear time algorithms based on sufficient statistics for string comparison with mismatches under the string kernels framework. Our algorithms improve t...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic
BMCBI
2007
227views more  BMCBI 2007»
15 years 1 months ago
Growing functional modules from a seed protein via integration of protein interaction and gene expression data
Background: Nowadays modern biology aims at unravelling the strands of complex biological structures such as the protein-protein interaction (PPI) networks. A key concept in the o...
Ioannis A. Maraziotis, Konstantina Dimitrakopoulou...
BMCBI
2006
118views more  BMCBI 2006»
15 years 1 months ago
A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images
Background: Knowledge of the subcellular location of a protein is critical to understanding how that protein works in a cell. This location is frequently determined by the interpr...
Shann-Ching Chen, Robert F. Murphy