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    IPPS
    2003
    IEEE
    105views Distributed And Parallel Com...» more  IPPS 2003»
    Sequence Alignment on the Cray MTA-2
    14 years 2 months ago
    Sequence Alignment on the Cray MTA-2
    Download  www.hicomb.org
    The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
    Shahid H. Bokhari, Jon R. Sauer
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    IPPS
    2007
    IEEE
    143views Distributed And Parallel Com...» more  IPPS 2007»
    Software and Algorithms for Graph Queries on Multithreaded Architectures
    14 years 3 months ago
    Software and Algorithms for Graph Queries on Multithreaded Architectures
    Download  www.cecs.uci.edu
    Search-based graph queries, such as finding short paths and isomorphic subgraphs, are dominated by memory latency. If input graphs can be partitioned appropriately, large cluster...
    Jonathan W. Berry, Bruce Hendrickson, Simon Kahan,...
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