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» Sequence Comparison Using a Relational Database Approach
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79
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VLDB
1995
ACM
135views Database» more  VLDB 1995»
15 years 4 months ago
Sampling-Based Estimation of the Number of Distinct Values of an Attribute
We provide several new sampling-based estimators of the number of distinct values of an attribute in a relation. We compare these new estimators to estimators from the database an...
Peter J. Haas, Jeffrey F. Naughton, S. Seshadri, L...
NAR
2002
98views more  NAR 2002»
15 years 8 days ago
Recent improvements to the SMART domain-based sequence annotation resource
SMART (Simple Modular Architecture Research Tool, http://smart.embl-heidelberg.de) is a web-based resource used for the annotation of protein domains and the analysis of domain ar...
Ivica Letunic, Leo Goodstadt, Nicholas J. Dickens,...
106
Voted
RECOMB
2006
Springer
16 years 28 days ago
Inferring Positional Homologs with Common Intervals of Sequences
Inferring orthologous and paralogous genes is an important problem in whole genomes comparisons, both for functional or evolutionary studies. In this paper, we introduce a new appr...
Guillaume Blin, Annie Chateau, Cedric Chauve, Yann...
EDBT
2009
ACM
170views Database» more  EDBT 2009»
15 years 4 months ago
Efficient constraint evaluation in categorical sequential pattern mining for trajectory databases
The classic Generalized Sequential Patterns (GSP) algorithm returns all frequent sequences present in a database. However, usually a few ones are interesting from a user's po...
Leticia I. Gómez, Alejandro A. Vaisman
BMCBI
2004
125views more  BMCBI 2004»
15 years 15 days ago
A functional hierarchical organization of the protein sequence space
Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...
Noam Kaplan, Moriah Friedlich, Menachem Fromer, Mi...