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» Sequence Comparison Using a Relational Database Approach
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ASPDAC
2008
ACM
108views Hardware» more  ASPDAC 2008»
15 years 4 months ago
Synthesis and design of parameter extractors for low-power pre-computation-based content-addressable memory using gate-block sel
Content addressable memory (CAM) is frequently used in applications, such as lookup tables, databases, associative computing, and networking, that require high-speed searches due t...
Jui-Yuan Hsieh, Shanq-Jang Ruan
ECIR
2006
Springer
15 years 3 months ago
A Declarative DB-Powered Approach to IR
We present a prototype system using array comprehensions to bridge the gap between databases and information retrieval. It allows researchers to express their retrieval models in t...
Roberto Cornacchia, Arjen P. de Vries
BMCBI
2007
265views more  BMCBI 2007»
15 years 2 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...
BMCBI
2006
112views more  BMCBI 2006»
15 years 2 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
145
Voted
NAR
2007
115views more  NAR 2007»
15 years 2 months ago
DroSpeGe: rapid access database for new Drosophila species genomes
The Drosophila species comparative genome database DroSpeGe (http://insects.eugenes.org/ DroSpeGe/) provides genome researchers with rapid, usable access to 12 new and old Drosoph...
Donald G. Gilbert