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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2008
121views more  BMCBI 2008»
15 years 2 months ago
ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
ICDE
2008
IEEE
125views Database» more  ICDE 2008»
16 years 3 months ago
RAD: A Scalable Framework for Annotator Development
Developments in semantic search technology have motivated the need for efficient and scalable entity annotation techniques. We demonstrate RAD: a tool for Rapid Annotator Developme...
Sanjeet Khaitan, Ganesh Ramakrishnan, Sachindra Jo...
IPPS
2010
IEEE
15 years 13 days ago
Fast Smith-Waterman hardware implementation
The Smith-Waterman (SW) algorithm is one of the widely used algorithms for sequence alignment in computational biology. With the growing size of the sequence database, there is alw...
Zubair Nawaz, Koen Bertels, Huseyin Ekin Sumbul
AIEDU
2005
185views more  AIEDU 2005»
15 years 2 months ago
A Bayesian Student Model without Hidden Nodes and its Comparison with Item Response Theory
The Bayesian framework offers a number of techniques for inferring an individual's knowledge state from evidence of mastery of concepts or skills. A typical application where ...
Michel C. Desmarais, Xiaoming Pu
BMCBI
2007
82views more  BMCBI 2007»
15 years 2 months ago
Visualization of three-way comparisons of omics data
Background: Density plot visualizations (also referred to as heat maps or color maps) are widely used in different fields including large-scale omics studies in biological science...
Richard Baran, Martin Robert, Makoto Suematsu, Tom...