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» Sequence Comparison Using a Relational Database Approach
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SIGCSE
2005
ACM
179views Education» more  SIGCSE 2005»
15 years 11 months ago
Design patterns for database pedagogy: a proposal
Courses in Relational Databases largely use a domain-specific design approach different from that used in the rest of the curriculum. Use of the Unified Process, UML, and Design P...
Thomas J. Marlowe, Cyril S. Ku, James W. Benham
RECOMB
2008
Springer
16 years 6 months ago
Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evo
Gene duplication has long been recognized as a major force in genome evolution and has recently been recognized as an important source of individual variation. For many years the o...
Jin Jun, Paul Ryvkin, Edward Hemphill, Ion I. Mand...
BMCBI
2010
163views more  BMCBI 2010»
15 years 6 months ago
DraGnET: Software for storing, managing and analyzing annotated draft genome sequence data
Background: New "next generation" DNA sequencing technologies offer individual researchers the ability to rapidly generate large amounts of genome sequence data at drama...
Stacy Duncan, Ruchita Sirkanungo, Leslie Miller, G...
BMCBI
2008
211views more  BMCBI 2008»
15 years 6 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
CORR
2007
Springer
170views Education» more  CORR 2007»
15 years 6 months ago
The structure of verbal sequences analyzed with unsupervised learning techniques
Data mining allows the exploration of sequences of phenomena, whereas one usually tends to focus on isolated phenomena or on the relation between two phenomena. It offers invaluab...
Catherine Recanati, Nicoleta Rogovschi, Youn&egrav...