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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2006
86views more  BMCBI 2006»
15 years 6 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
NAR
2010
174views more  NAR 2010»
15 years 1 months ago
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
BeetleBase (http://www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genom...
Hee Shin Kim, Terence Murphy, Jing Xia, Doina Cara...
BIRTHDAY
2010
Springer
15 years 11 months ago
Indexing and Searching a Mass Spectrometry Database
Abstract. Database preprocessing in order to create an index often permits considerable speedup in search compared to the iterated query of an unprocessed database. In this paper w...
Søren Besenbacher, Benno Schwikowski, Jens ...
TC
1997
15 years 7 months ago
An Extensible Framework for Repairing Constraint Violations
In this paper we describe a new approach to repairing violations of integrity constraints in databases with null values. By adopting basic concepts from model-based diagnosis, we ...
Michael Gertz, Udo W. Lipeck
INAP
2005
Springer
15 years 11 months ago
Using a Logic Programming Language with Persistence and Contexts
Abstract. This article merges two approaches: one dealing with persistence for logic programs, as provided by a relational database back-end and another which addresses the issues ...
Salvador Abreu, Vítor Nogueira