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» Sequence Comparison Using a Relational Database Approach
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ISMB
2007
15 years 8 months ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert
ICCBR
2003
Springer
15 years 11 months ago
Case Mining from Large Databases
Abstract. This paper presents an approach of case mining to automatically discover case bases from large datasets in order to improve both the speed and the quality of case based r...
Qiang Yang, Hong Cheng
150
Voted
XIMEP
2006
ACM
179views Database» more  XIMEP 2006»
16 years 7 days ago
Positional Grouping in XQuery
This paper proposes an extension to the XQuery language to solve the problem of positional grouping: that is, problems in which it is necessary to convert a flat sequence into a h...
Michael H. Kay
BMCBI
2004
140views more  BMCBI 2004»
15 years 6 months ago
What can we learn from noncoding regions of similarity between genomes?
Background: In addition to known protein-coding genes, large amounts of apparently non-coding sequence are conserved between the human and mouse genomes. It seems reasonable to as...
Thomas A. Down, Tim J. P. Hubbard
BMCBI
2011
15 years 1 months ago
Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms
Background: The Cancer Genome Anatomy Project (CGAP) xProfiler and cDNA Digital Gene Expression Displayer (DGED) have been made available to the scientific community over a decade...
Andrew T. Milnthorpe, Mikhail Soloviev