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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2006
149views more  BMCBI 2006»
15 years 6 months ago
Curation of viral genomes: challenges, applications and the way forward
Background: Whole genome sequence data is a step towards generating the 'parts list' of life to understand the underlying principles of Biocomplexity. Genome sequencing ...
Urmila Kulkarni-Kale, Shriram Bhosle, G. Sunitha M...
BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
15 years 4 months ago
Probabilistic topic modeling for genomic data interpretation
Recently, the concept of a species containing both core and distributed genes, known as the supra- or pangenome theory, has been introduced. In this paper, we aim to develop a new ...
Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
272
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CVPR
2005
IEEE
16 years 8 months ago
Local Discriminant Embedding and Its Variants
We present a new approach, called local discriminant embedding (LDE), to manifold learning and pattern classification. In our framework, the neighbor and class relations of data a...
Hwann-Tzong Chen, Huang-Wei Chang, Tyng-Luh Liu
BMCBI
2005
78views more  BMCBI 2005»
15 years 6 months ago
PREP-Mt: predictive RNA editor for plant mitochondrial genes
Background: In plants, RNA editing is a process that converts specific cytidines to uridines and uridines to cytidines in transcripts from virtually all mitochondrial protein-codi...
Jeffrey P. Mower
BMCBI
2011
15 years 1 months ago
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and proposi
Background: Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequenc...
Juliana S. Bernardes, Alessandra Carbone, Gerson Z...