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» Sequence Comparison Using a Relational Database Approach
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NAR
2011
274views Computer Vision» more  NAR 2011»
14 years 7 months ago
A series of PDB related databases for everyday needs
The Protein Data Bank (PDB) is the world-wide repository of macromolecular structure information. We present a series of databases that run parallel to the PDB. Each database hold...
Robbie P. Joosten, Tim A. H. te Beek, Elmar Kriege...
82
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BMCBI
2010
99views more  BMCBI 2010»
15 years 16 days ago
Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays
Background: Alternative splicing is an important mechanism that increases protein diversity and functionality in higher eukaryotes. Affymetrix exon arrays are a commercialized pla...
Yi Qu, Fei He, Yuchen Chen
88
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SIGPRO
2008
104views more  SIGPRO 2008»
15 years 10 days ago
Macromolecular sequence analysis using multiwindow Gabor representations
Multiwindow Gabor representations highlight fingerprints suitable for indexing of macromolecules, based on their local periodic structures. This paper presents a technique for ana...
Nagesh K. Subbanna, Yehoshua Y. Zeevi
PKDD
2005
Springer
105views Data Mining» more  PKDD 2005»
15 years 5 months ago
Protein Sequence Pattern Mining with Constraints
Considering the characteristics of biological sequence databases, which typically have a small alphabet, a very long length and a relative small size (several hundreds of sequences...
Pedro Gabriel Ferreira, Paulo J. Azevedo
KBSE
2008
IEEE
15 years 6 months ago
Query-Aware Test Generation Using a Relational Constraint Solver
We present a novel approach for black-box testing of database management systems (DBMS) using the Alloy tool-set. Given a database schema and an SQL query as inputs, our approach ...
Shadi Abdul Khalek, Bassem Elkarablieh, Yai O. Lal...