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» Sequence Comparison Using a Relational Database Approach
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110
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JPDC
2007
167views more  JPDC 2007»
15 years 10 days ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
AIMSA
2006
Springer
15 years 4 months ago
Using Verbs to Characterize Noun-Noun Relations
Abstract. We present a novel, simple, unsupervised method for characterizing the semantic relations that hold between nouns in noun-noun compounds. The main idea is to discover pre...
Preslav Nakov, Marti A. Hearst
ICDE
2004
IEEE
179views Database» more  ICDE 2004»
16 years 1 months ago
CrossMine: Efficient Classification Across Multiple Database Relations
Most of today's structured data is stored in relational databases. Such a database consists of multiple relations which are linked together conceptually via entity-relationsh...
Xiaoxin Yin, Jiawei Han, Jiong Yang, Philip S. Yu
103
Voted
BMCBI
2010
172views more  BMCBI 2010»
15 years 17 days ago
Accessing the SEED genome databases via Web services API: tools for programmers
Background: The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems ...
Terry Disz, Sajia Akhter, Daniel Cuevas, Robert Ol...
124
Voted
BMCBI
2008
104views more  BMCBI 2008»
15 years 17 days ago
Comparison of methods for estimating the nucleotide substitution matrix
Background: The nucleotide substitution rate matrix is a key parameter of molecular evolution. Several methods for inferring this parameter have been proposed, with different math...
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, G...