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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2007
174views more  BMCBI 2007»
15 years 3 days ago
ESTuber db: an online database for Tuber borchii EST sequences
Background: The ESTuber database (http://www.itb.cnr.it/estuber) includes 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-hou...
Barbara Lazzari, Andrea Caprera, Cristian Cosentin...
BMCBI
2010
121views more  BMCBI 2010»
14 years 9 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
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BMCBI
2005
111views more  BMCBI 2005»
15 years 13 hour ago
Improving interoperability between microbial information and sequence databases
Background: Biological resources are essential tools for biomedical research. Their availability is promoted through on-line catalogues. Common Access to Biological Resources and ...
Paolo Romano, Peter Dawyndt, Francesca Piersigilli...
SSD
2001
Springer
162views Database» more  SSD 2001»
15 years 4 months ago
Interval Sequences: An Object-Relational Approach to Manage Spatial Data
The design of external index structures for one- and multidimensional extended objects is a long and well studied subject in basic database research. Today, more and more commercia...
Hans-Peter Kriegel, Marco Pötke, Thomas Seidl
BMCBI
2008
103views more  BMCBI 2008»
15 years 7 days ago
The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences
Background: Viruses of the Bunyaviridae have segmented negative-stranded RNA genomes and several of them cause significant disease. Many partial sequences have been obtained from ...
Mathieu Fourment, Mark J. Gibbs