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» Sequence Comparison Using a Relational Database Approach
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108
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ISPASS
2007
IEEE
15 years 6 months ago
A Comparison of Two Approaches to Parallel Simulation of Multiprocessors
— The design trend towards CMPs has made the simulation of multiprocessor systems a necessity and has also made multiprocessor systems widely available. While a serial multiproce...
Andrew Over, Bill Clarke, Peter E. Strazdins
BMCBI
2008
163views more  BMCBI 2008»
15 years 19 days ago
Gene Ontology term overlap as a measure of gene functional similarity
Background: The availability of various high-throughput experimental and computational methods allows biologists to rapidly infer functional relationships between genes. It is oft...
Meeta Mistry, Paul Pavlidis
108
Voted
BMCBI
2006
93views more  BMCBI 2006»
15 years 17 days ago
A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
Background: Many of the most popular pre-processing methods for Affymetrix expression arrays, such as RMA, gcRMA, and PLIER, simultaneously analyze data across a set of predetermi...
Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Trip...
102
Voted
BMCBI
2007
105views more  BMCBI 2007»
15 years 19 days ago
Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences
Background: The secondary structure of an RNA must be known before the relationship between its structure and function can be determined. One way to predict the secondary structur...
Stefan Engelen, Fariza Tahi
98
Voted
BMCBI
2008
112views more  BMCBI 2008»
15 years 19 days ago
A simplified approach to disulfide connectivity prediction from protein sequences
Background: Prediction of disulfide bridges from protein sequences is useful for characterizing structural and functional properties of proteins. Several methods based on differen...
Marc Vincent, Andrea Passerini, Matthieu Labb&eacu...