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» Sequence Comparison Using a Relational Database Approach
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121
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BMCBI
2002
133views more  BMCBI 2002»
15 years 10 days ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
118
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EMNLP
2008
15 years 2 months ago
An Analysis of Active Learning Strategies for Sequence Labeling Tasks
Active learning is well-suited to many problems in natural language processing, where unlabeled data may be abundant but annotation is slow and expensive. This paper aims to shed ...
Burr Settles, Mark Craven
84
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PKDD
2007
Springer
87views Data Mining» more  PKDD 2007»
15 years 6 months ago
Visual Exploration of Genomic Data
Abstract. In this study, we present methods for comparative visualization of DNA sequences in two dimensions. First, we illustrate a transformation of gene sequences into numerical...
Michail Vlachos, Bahar Taneri, Eamonn J. Keogh, Ph...
IANDC
2011
148views more  IANDC 2011»
14 years 7 months ago
Building species trees from larger parts of phylogenomic databases
Abstract. Gene trees are leaf-labeled trees inferred from molecular sequences. Due to duplication events arising in genome evolution, gene trees usually have multiple copies of som...
Celine Scornavacca, Vincent Berry, Vincent Ranwez
ALMOB
2008
160views more  ALMOB 2008»
15 years 19 days ago
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Background: Identification of homologous regions or conserved syntenies across genomes is one crucial step in comparative genomics. This task is usually performed by genome alignm...
Christian Rödelsperger, Christoph Dieterich